![]() In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.Integration of major protein structure and sequence databases and associated search tools.Perform conservation analysis of sequence and structural data. Description : REPPER (REPeats and their PERiodicities) is a web-based tool to detect and analyze short identical repeats in protein sequences.Perform ensemble normal mode analysis on large structure sets to explore evolutionary dynamics and structure dependent protein flexibility.Perform atom selection, alignment and superposition, rigid core identification, dynamic domain analysis, conformational clustering, correlation network analysis, torsion analysis, distance matrix analysis and principal component analysis of structure data.The ability to read, write and process biomolecular structure, sequence and dynamics trajectory data.It is currently distributed as platform independent source code under the GPL version 3 license. Bio3D is an R package containing utilities for the analysis of protein structure, sequence and trajectory data. Phyre2 is a suite of tools available on the web to predict and analyse protein structure, function and mutations. ![]()
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